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Quick Links

  • Feature Search:Search for features by type. Filter on an additional text query if desired.
  • Gene Expression Publications: Search and browse publications with gene expression data that are stored in TBDB.
  • Samples and Conditions:
    Search for a gene over all published samples and explore the expression significance of the indicated gene.
  • Gene Profiles:
    Search for a gene in the published data sets. You will be able to explore the gene expression of the indicated gene in each publication.
  • My Repository (sign in required): Access your saved microarray data sets for further analysis.
  • BLAST - search all genomes by sequencing similarity
  • Genes - Gene annotations by functional categories
  • Download - download data files for sequence and annotation

    • Search Regulatory Binding Sites

    Regulators

    Find Regulators for
     

    Advanced Search Options

    diagram explaining peak proximity

    When searching for binding sites representing REGULATORS of Query Gene X, the search results will include peaks for regulators of sites near Gene X within a window of base pairs defined by the peak proximity parameter.

    Targets

    Find Targets for
     

    Advanced Search Options

    diagram explaining peak proximity

    When searching for binding sites representing TARGETS of Query Gene X, the search results will include peaks near targets (Genes Y, Z) within a window of base pairs defined by the peak proximity parameter.

    Peaks

    Peaks around position
     

    Advanced Search Options

    diagram explaining peak proximity

    When searching for binding sites near Query Gene X, the search results will include peaks on either side of Gene X within a window of base pairs defined by the peak proximity parameter.

     

    This page allows you to search for regulatory binding interactions based on ChIP-Seq data. You can search for binding in one of three ways:

    1. Find regulators for a target gene. This allows you to search for transcription factors that have a binding site near a particular target gene.
    2. Find targets for a transcription. This allows you to search for target genes that have a binding site from a particular transcription factor. Only predicted transcription factors can be entered in this search.
    3. Find peaks around a position. This allows you to search for transcription factors that have a binding site near a particular genomic region.

    Select Advanced Search Options to tailor the parameters of each search. You may enter Rv#s or gene symbols.