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Quick Links

  • Feature Search:Search for features by type. Filter on an additional text query if desired.
  • Gene Expression Publications: Search and browse publications with gene expression data that are stored in TBDB.
  • Samples and Conditions:
    Search for a gene over all published samples and explore the expression significance of the indicated gene.
  • Gene Profiles:
    Search for a gene in the published data sets. You will be able to explore the gene expression of the indicated gene in each publication.
  • My Repository (sign in required): Access your saved microarray data sets for further analysis.
  • BLAST - search all genomes by sequencing similarity
  • Genes - Gene annotations by functional categories
  • Download - download data files for sequence and annotation

    • Tutorial: Mapping Your Own Data on Metabolic Overview

     

    How do I map expression data from my own experiments onto the metabolic overview?

    From TB Metabolic Networks Home (http://tbcyc.tbdb.org/), click on Cellular Overview.

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    In the Cellular Overview menu, select overlay experimental data.

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    Select the appropriate parameters for your data set.

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    Select a tab-delimited file in the format shown, and then select submit.

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    (You can download a sample data file here.)

    Results should appear as in the omics viewer figure. If you have multiple time points, then each time point is displayed in an animation.

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